F. Chevenet - Publications

Research engineer in computational biology, bioinformatics, in the field of information visualization and phylogeny.MIVEGEC: Maladies Infectieuses et Vecteurs Ecologie, Génétique, Évolution et ContrôleCentre IRD de Montpellier911 Avenue Agropolis BP 64501 34394 Montpellier cedex 5 - Francefrancois.chevenet@ird.frMAB: Méthodes et Algorithmes pour la BioinformatiqueLaboratoire d'Informatique Robotique et Microélectronique de Montpellier (LIRMM)161 rue Ada 34095 Montpellier Cedex 5 - Francefrancois.chevenet@lirmm.f

Publications

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Chevenet F et al 2019 PastView: a user-friendly interface to explore evolutionary scenarios BMC Evolutionary Biology
Chevenet F et al 2015 SylvX: a viewer for phylogenetic tree reconciliations Bioinformatics
Chevenet F et al 2013 PhyloType: Searching for Virus Phylotypes Bioinformatics
Chevenet F et al 2010 ScripTree: scripting phylogenetic graphics Bioinformatics
Chevenet F et al 2006 TreeDyn: towards dynamic graphics and annotations for analyses of trees BMC Bioinformatics

Articles de revues

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2018 Duchemin W et al. RecPhyloXML - a format for reconciled gene trees Bioinformatics
2018 Berry R et al. A geography aware reconciliation method to investigate diversification patterns in host/parasite interactions Molecular Ecology Resources
2015 Mourad R et al. A phylotype-based analysis highlights the role of drug-naive HIV-positive individuals in the transmission of antiretroviral resistance in the UK AIDS
2014 Fiorini N et al. CompPhy: a we-based collaborative platform for comparing phylogenies BMC Evolutionary Biology
2013 Jousselin E et al. Is ecological speciation a major trend in aphids? Frontiers in Zoology
2013 El Baidouri F et al. Genetic structure and evolution of theLeishmania genus in Africa and Eurasia: what does MLSA tell us PLoS Neglected Tropical Diseases
2010 Croce O et al. A New Web Server for the Rapid Identification of Microorganisms J Microbial Biochem Technol
2008 Dereeper A et al. Phylogeny.fr: Robust Phylogenetic Analysis for the Non-Specialist Nucleic Acids Research
2008 Croce O et al. OligoHeatMap (OHM): an online tool to estimate and display hybridizations of oligonucleotides onto DNA sequences Nucleic Acids Research
2008 Godreuil S et al.. Mycobacterium tuberculosis in Burkina Faso : a first molecular epidemiology study Journal of Clinical Microbiology
2006 Biron D et al. The pitfalls of proteomics experiments without the correct use of bioinformatics tools Proteomics
2006 Baudot A et al. PRODISTIN web site: a tool for the functional classification of proteins from interaction networks Bioinformatics
2005 Simón O et al. Physical and Partial Genetic Map of Spodoptera frugiperda Nucleopolyhedrovirus (SfMNPV) Genome Virus Genes
2003 Brun C et al. Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network Genome Biology
1996 Thioulouse J et al. NetMul, a World-Wide Web user interface for multivariate analysis software. Computational Statistics and Data Analysis
1994 Willamowski J et al. 1994. A development shell for cooperative problem-solving environments. Mathematics and Computers in Simulation
1994 Chevenet F et al. A Fuzzy Coding Approach for the Analysis of Long-term Ecological Data. Freshwater Biology

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